T2 Biosystems, Inc.

around the world. To advance our mission and create value across our stakeholders, we're focused on three corporate priorities, accelerating our sales, enhancing our operations, and advancing our pipeline. I'll now discuss our recent progress and the strategic approach for each of these priorities. Starting with our first priority, accelerating our sales, Our strategy to accelerate sales consists of three tactical components. One, transitioning instruments sold in the U.S. during the second half of 2020 from COVID-19 to sepsis testing. Two, increasing sepsis test utilization within our legacy installed base. And three, expanding our T2DX instrument installed base. In the second quarter, we sold three T2DX instruments, including two in the US. And we also achieved routine use for T2Bacteria and T2Canada panels in three ex-US hospitals, following tenders won in Austria, France, and Kuwait, which we believe will be among our largest customers. To accelerate sales, we have increased the size of our US sales team, which now stands at 11 regional account managers. expanded our commercial organization, and focused our commercial strategy to more comprehensively address the needs of our customers. Because our technology addresses one of the most complex healthcare problems, several functional groups in the hospital are involved in the sales process, including clinicians, laboratorians, pharmacists, and administrators. Each of these key stakeholders has unique needs and challenges, and our commercial team has made incredible strides to advance our sales funnel opportunities by bringing this coalition together and building a hospital-specific business and clinical case. Our team recently completed an advanced sales training to further expand their knowledge of how to drive change in clinical practice, which includes increased engagement with our customers. At this time, our US sales team has more than 200 hospitals that are officially in the sales funnel and we continue to support their efforts by increasing our clinical marketing effort to build a larger funnel of potential customers. In the first quarter of 2021, we appointed Dr. Aparna Ahuja to the newly created position of Chief Medical Officer. Dr. Ahuja has been actively building out our clinical and medical affairs team with a priority to enhance the messaging around the value of our products. This will be accomplished by partnering, with both early adopter customers and with key opinion leaders, or KOLs, to generate and share data via scientific journal publications and at medical conferences and trade shows. Dr. Ahuja and her team have been working closely with KOLs with the mission to deepen our presence at key medical conferences and build widespread awareness among the scientific community of the value of our products. Starting in the first quarter, We have had numerous high-profile presentations at a number of conferences, including presentations at the American Society for Microbiology and Federation of European Microbiology Sciences World Microbe Forum, the Sepsis Alliance's inaugural Sepsis Tech and Innovation 2021 Conference, and the European Society of Clinical Microbiology and Infectious Diseases 31st European Congress of Clinical Microbiology and Infectious Diseases. At the European Congress of Clinical Microbiology and Infectious Diseases, several studies were presented by independent investigators that evaluated our products compared to blood culture and post-culture molecular platforms, including diagnostic accuracy, time to results, and clinical impact. In a prospective observational study conducted by Dr. Pagy at the University of Perugia, the T2 Bacteria Panel demonstrated a sensitivity of 100% and a negative predicted value, or NPV, of 100% as compared to blood culture sensitivity of 57.1% and negative predicted value of 81.8%. The time to report T2 bacteria results was 4.17 hours as compared to blood culture time to result of 36.34 hours. Most importantly, A positive T2 bacteria resulted in a change from empiric therapy to directed therapy in 29.2% of patients on the same day as the T2 bacteria sample drawing. And a negative T2 bacteria resulted in a change from empiric therapy to directed therapy in 8% of patients. We believe commercial success requires clinical data bolstered by economic evidence and is a key to accelerating sales, including transitioning instruments from COVID-19 to sepsis diagnostic testing, increasing test utilization among our current sepsis accounts, and expanding our installed base. Demonstrating and messaging these improved clinical outcomes and reductions in the cost of care achieved by our customers through routine use of our products is very compelling. We've placed a higher priority on adding to and organizing these data for use by our commercial team. This strategy is already generating additional interest and deeper customer conversations. In what we view as a validation, CMS has again decided to extend the new technology add-on payment or NTAP for our T2 bacteria panel through fiscal year 2022. This favorable reimbursement further increases the economic value of the test to hospitals. Our commercial team will continue to leverage this designation and educate customers on the benefits. Now I want to circle back to the tactical components of our sales strategy. Early in the COVID-19 pandemic, we recognized a need among our US hospital customers, the same ones that could potentially use our sepsis products, to detect SARS-CoV-2 quickly and accurately. In a short period of time, we were able to leverage our technology to develop a test that met those needs. As the SARS-CoV-2 virus continues to evolve, we have been diligent in our efforts to ensure that our test is able to detect emerging variants. In fact, we recently announced that our T2 SARS-CoV-2 panel is capable of detecting all variants of interest and concern as noted by the CDC, including the alpha, beta, gamma, delta, and lambda variants of the virus. based on sequence and in silico analysis. Offering this test opened the door to many new customers for T2 Biosystems. As part of the sales process, we were disciplined in pre-qualifying potential COVID-19 customers based on their willingness to explore adoption of our sepsis diagnostic panels following the pandemic. Executing on this opportunity, we more than doubled our US installed base of instruments during the second half of 2020. As a company that focuses on making a difference in the lives of sepsis patients, rapidly detecting the pathogens that cause sepsis remains our number one focus and underpinned our decision to develop and commercialize a COVID-19 diagnostic test. Although COVID-19 testing volumes in the U.S. declined in the second quarter with the adoption of vaccines, as of the end of June, our sales team have been granted access to visit many of our current customers and potential new customers to actively engage in face-to-face discussion around the adoption of our sepsis-related products. This is generally in line with our previously stated expectation that hospital access was going to be limited in the first half of the year with access opening up in the second half. At this time, we feel U.S. hospitals now have the necessary precautions and procedures in place for continued interactions through the second half of the year. allowing us to continue to drive new sepsis opportunities through our sales funnel. Overall, the impacts of COVID-19 remain a headwind to the adoption of our sepsis products. We remain optimistic that we will continue to have open access to our hospital customers through the second half of the year, as well as an increasing mindshare of personnel within hospitals. Accordingly, we continue to expect total revenue for the full year 2021 to be between $24 million and $26 million. And we are adjusting our expectation for the mix of product and research revenues. We now expect product revenues of $14 million to $15 million, down from $16 million to $18 million, driven by lower T2 SARS-CoV-2 panel sales, but partially offset by increased sepsis test panel sales. At the same time, Due to updated expectations around timing of milestones and options under the BARDA contract, which I will discuss later, we now expect research contribution revenues of $10 million to $11 million, up from $8 million. Also, we continue to expect to enter into at least 30 T2DX instrument contracts in 2021. Moving to our second priority, enhancing our operations. At the beginning of 2021, We set the goal of enhancing our business operations with a focus on product gross margins, operating cost structure, and efficiency. We reviewed all business and manufacturing processes, as well as our business tools. During this review, each cost line item was carefully scrutinized to ensure that expenses or investments were aligned with our 2021 priorities, including our growth objectives. We continue to focus on scaling our manufacturing capabilities and strengthening our supply chain. Over the last year, we've scaled our manufacturer from being able to produce 2,000 tests a week to over 7,000 tests a day. We did this by scrutinizing every aspect of the manufacturing process, eliminating waste and adding efficiencies. The increased volume and efficiencies added to our processes have had a favorable impact on our product gross margins. We also examine the tool sets we use across our business to weed out any inhibitors to growth and make the business more efficient. One key element of efficiency improvement will be the rollout of a new ERP system we expect to go live in the coming months. This updated tool will allow us to better track all our manufacturing processes, improve our customer service, better understand and predict customer ordering patterns, and identify additional opportunities for improvement. Lastly, moving to our third priority, advancing our pipeline. While our long-term goal is to change the standard of care for patients at risk of sepsis, our immediate goal is to deepen our market penetration by continuing to enhance our product offering. In 2019, we were awarded a product development contract by the Biomedical Advanced Research Development Authority, or BARDA, that is valued at up to $69 million based upon the achievement of certain milestones. In collaboration with the team at BARDA, we continue to make great progress and are confident in our ability to meet all of the milestones defined in option one by October, 2021. Given this progress, we're optimistic about the opportunity to gain approval for option two. On our first quarter earnings call, we had announced that after discussions with BARDA, we had mutually agreed to modify the terms of the existing contract to accelerate certain milestones. including for the development of the Comprehensive Sepsis Panel, the Next Generation Instrument, and the BioThreat Panel. Additionally, BARDA has agreed to add milestones for the T2 Resistance Panel, which provides funding and assistance to conduct clinical trials and pursue US regulatory approval. While the T2 Resistance Panel is currently being sold in Europe under a CE mark, additional verification and validation studies are needed to initiate the clinical trial required to pursue U.S. FDA 510 clearance. The teacher resistance panel was granted breakthrough device designation by the FDA, which has expedited communications with the agency on proposed analytical and clinical requirements. We plan to initiate the U.S. clinical trial for the teacher resistance panel during the first quarter of 2022. Initial findings from a multicenter prospective study of the teacher resistance panel for the detection of resistance markers in blood samples from patients suspected with a bloodstream infection were presented at the European Congress of Clinical Microbiology and Infectious Diseases. The objective of this study was to compare the T2 resistance panel with blood culture and molecular and phenotypic resistance testing, evaluating sensitivity and specificity, as well as time to detection of resistant markers in patients with bacterial bloodstream infections. The T2 resistance panel mean time to results was 4.4 hours compared to 101.4 hours for final reporting of positive blood cultures with antibiotic susceptibility testing. Time for data from molecular resistance assay results following blood cultures was 33.7 hours. When monitored for the impact of significant antibiotic changes at one site, The use of T2 resistance allowed 22 events of discontinuance of unnecessary antibiotics and 10 events of escalation of antibiotics. In summary, the T2 resistance molecular markers were sensitive and specific for the detection of drug-resistant genes in patients with resistant bacterial bloodstream infections when compared to standard molecular resistance detection systems and phenotypic identification systems. while also significantly reducing time to detection of resistance genes compared to standard methodology by approximately 90%. The BioThreat Panel is designed to be a highly sensitive direct-from-blood panel able to detect six major BioThreat Pathogens from a single blood sample. This panel will run on our FDA-cleared T2Dx instrument. We have completed development for this panel and have demonstrated preliminary detection of all targeted biothreat panels pathogens directly in whole blood at less than 25 CFU per ml. I'm pleased to inform you that we plan to initiate the US clinical trial for the biothreat panel during the first quarter of 2022. The next generation instrument will utilize a single whole blood sample independent of blood culture and is designed to be fully automated on demand and random access similar to our T2DX instrument, but with faster turnaround times and a much larger target menu. It is being developed in parallel with the comprehensive sepsis panel to detect an increased number of pathogens and resistance genes at the same level of sensitivity our customers have come to expect. We're pleased to announce that we have completed building our alpha prototypes, which we are testing against our requirements. From this testing, we have begun final design iterations for our beta prototypes, at which point it will merge with the assay and start full scale on system wet testing. The comprehensive sepsis panel is designed to detect approximately 99% of all bloodstream infections caused by bacterial and Canada species, as well as all bloodborne antibiotic resistant threats identified by the CDC in a single test with a time to result of approximately three hours. The test will build on existing technology and detect pathogens and resistant markers directly from blood samples without the need to wait for a positive blood culture. We believe this comprehensive sepsis panel has the potential to completely disrupt the traditional blood culture workflow and become a standard of care. Early development studies with the comprehensive sepsis panel utilizing manual testing has demonstrated our ability to detect all panel targets directly in whole blood at levels below 50 CFU per ml. As we move forward with development studies, we will continue to optimize our manual workflow conditions, utilizing processes and subassemblies from alpha and beta prototypes to increase sensitivity and ensure smooth right migration onto the automated system. Finally, I'd like to share an update that was previously discussed at our shareholder meeting. John McDonough has resigned from our board of directors. On behalf of the board, I want to thank John for his service to T2 Biosystems over the last 14 years, and we wish him the best in the future. Our board has determined that it is in the best interest of the company and its stockholders to combine the roles of chairman and CEO and to appoint a lead independent director. Accordingly, I have been appointed as chairman of the board of directors and Jack Cumming, former chairman and CEO of Hologic, will continue to serve as lead independent director. With that, I will now turn the call over to John Sprague to go over the details of our second quarter financial results.

Thank you, John. Total revenue for the second quarter of 2021 was $6.7 million, an increase of 162% compared to the prior year period. Product revenue was $3.7 million, an increase of 253% compared to the prior year period driven primarily by increased sepsis and COVID-19 test sales. Research contribution revenue was $3 million, an increase of 100% compared to the prior year period driven by increased BARDA contract activities. Product costs for the second quarter of 2021 were $4.8 million, an increase of $2.5 million compared to the prior year period driven by increased sales. Research and development expenses were $5.4 million, an increase of $1.6 million driven by increased BARDA contract activities. Selling, general, and administrative expenses were $7.2 million, an increase of $1.9 million driven by increased commercial team headcount. Net loss for the second quarter of 2021 was $12.5 million, 8 cents per share, compared to a net loss of $10.7 million, 9 cents per share for the prior year period. Total cash was $53.3 million as of June 30th, 2021, including markable securities and restricted cash. In the second quarter of 2021, we strengthened our balance sheet by selling 16.8 million shares for net proceeds of $20.2 million through the ATM facility. We also achieved the final revenue covenant of $20 million for the CRG debt agreement in June 2021. As John mentioned, for guidance, we continue to expect total revenue for the full year 2021 of $24 to $26 million, but we are adjusting the mix of product and research contribution revenues. We now expect product revenue of $14 to $15 million and research contribution revenues of $10 to $11 million. We continue to expect to enter into at least 30 T2DX instrument contracts in 2021. Thank you, and back to John Spurzel for closing remarks.

Our team continues to make meaningful progress across our three corporate priorities, accelerating our sales, enhancing our operations, and advancing our pipeline. Our sales have accelerated considerably compared to the prior year period, with total revenue growth of 162% and product revenue growth of 253%. We anticipate that the second half of the year will provide a more favorable opportunity to accelerate product sales as hospitals loosen restrictions and grant increased access to our expanded sales team. Simultaneously, we continue to strengthen our medical and clinical affairs teams to generate additional clinical and economic data to support the adoption of our products, build relationships with key opinion leaders, increase our presence at scientific meetings, and provide support to our customers. Our efforts to improve our internal operations are beginning to yield encouraging results, and we remain committed to the development of our pipeline products of revolutionary diagnostics, including the T2 Resistance Panel. We're very excited about the opportunity to change the standard of care for patients at risk of sepsis, and we look forward to updating you on our next call. With that, we'll open it up to questions. Operator?

At this time, we'll be conducting a question and answer session. If you would like to ask a question, please press star 1 on your telephone keypad. A confirmation tone will indicate that your line is in the question queue. You may press star 2 if you would like to remove your question from the queue. For participants using speaker equipment, it may be necessary to pick up your handset before pressing the star keys. One moment, please, while we poll for questions. Our first question is from Mark Mazzaro with BTIG. Please proceed with your question.

Hey guys, this is Vivian on for March. Uh, thanks for taking the question. Um, so I was wondering if you could discuss how the mixed shift of COVID versus sepsis is progressing, um, relative to your prior goal of 200,000 for annualized utilization, um, and what initiatives you have to boost the sepsis utilization. Um, and if I could just add a follow up, um, how many accounts have you converted thus far? Um, and what are your expectations? for conversions for the year ahead? Thanks.

I'll take those in reverse order if it's okay. We expect to convert 14 accounts out of the COVID accounts that we sold last year. We have converted two so far. That's in line with our expectations given the fact that we thought the second half would be a much more favorable environment and that our sales team was essentially locked out of hospitals during the first half of the year due to COVID restrictions. In terms of the utilization, we really bifurcate the sepsis test utilization and the COVID test utilization. And we separate those into legacy sepsis instruments. Those would be the instruments that we sold into the US prior to July 1st of 2020. And so we want to keep a constant measurement on our ability to drive increased utilization on those accounts. And it has gone from about $50,000 per instrument annualized in the first quarter of 2020 to its current state of just under $100,000. That was a slight tick down from the first quarter of this year. And we believe that was entirely due to supply chain constraints, which again were resolved early in the third quarter. As far as our COVID test utilization, that's entirely driven by what's happening in the market. not currently trying to sell new instruments for COVID testing. The initiative that we had around COVID testing was really driven by a need that we knew hospital laboratories would have, the same hospitals that would be using our sepsis test. All of the instruments that we sold went into microbiology labs. And so while we're reporting this COVID test utilization, we're really much more focused on the sepsis test utilization.

Okay, great. Thanks so much for that. I was also wondering if you could discuss your goals for your Salesforce ramp, along with the formation of your scientific advisory board.

We planned to rebuild the US sales team from two people, I think was what we ended 2020 with, to 10 regional account managers. We currently have 11 regional account managers. And the plan is to go to 20 in 2022. So we're going to continue to lean into the opportunity and continue to build our commercial organization accordingly. I spent a fair amount of time in the prepared remarks talking about the importance of clinical data and economic data in terms of being able to successfully drive customer adoption and increased test utilization, but also longer term to drive changes in a standard of care that is clearly failing patients, payers, and providers. And so we are entirely rebuilding our clinical and medical affairs team under Dr. Ahuja. And we're rebuilding that from what historically was a team predominantly built with PharmDs, to a team that is built with personnel that more accurately reflect the kind of customers that we're working with on a day-to-day basis in sepsis. That means laboratory professionals, yes, PharmDs, but also medical doctors that have experience in infectious disease. So I think by the end of the year, you'll see an entirely rebuilt medical and clinical affairs team that can do exactly what we aspire to do, and that is build a very strong data set, clinical data and economic data, to help support our sales team and drive additional sales and drive greater adoption.

Okay, perfect. Last one from me, just kind of building off of that, could you provide some more color on the clinical trials you mentioned for T2 resistance and the biothreat panel?

Yes. So we, for the first time, have disclosed when we plan to initiate those clinical trials. And for those that are familiar with a stage gate product development process, what typically precedes the initiation of the clinical trial is a verification and validation phase. That would mean that we're in the verification validation phase, both for the T2 BioThreat Panel and for the T2 Resistance Panel. And remember, both of those test panels run on our current FDA cleared T2DX instrument. So those two initiatives are about driving or expanding the menu on our existing platform, which is part of our strategy around sepsis. Once we have a very clear line of sight on the clinical trial, the scope of the clinical trial, the number of sites, the number of patients required by the FDA, those are discussions that are ongoing. and we have a better line of sight on the completion of those clinical trials, I will publicly share that information, but it would be premature at this point.

Okay, got it. Thanks so much for taking the questions.

Thank you.

As a reminder, please press star 1 if you would like to ask a question. One moment, please, while we poll again for questions. Ladies and gentlemen, we've reached the end of the question and answer session, and I would like to turn the call back over to John Spurzel for the closing remarks.

Thank you very much for participating in our quarter two 2021 earnings call. We look forward to updating you next quarter. Have a great day.

This concludes tonight's conference. You may disconnect your lines at this time. Thank you for your participation.